gmod_sort_gff3.pl - Sorts a GFF3 file to put lines with Parent tags after their parent.
Contents
Command-Line Options
--infile Name of the input gff3 file (required)
--outfile Name of the output gff3 file
(default: sorted.gff)
Description
This is a very simple (and only lightly tested) script for sorting gff3 files so that all lines that have
Parent tags come after the line that contains the parent ID tag. Files thusly sorted are required for
the GMOD chado bulk loader, gmod_bulk_load_gff3.pl.
Name
gmod_sort_gff3.pl - Sorts a GFF3 file to put lines with Parent tags after their parent.
Synopsis
% gmod_sort_gff3.pl --infile <gff file name>
