kmc_tools-intersect - calculate intersection of two KMC databases

       KMC was originally written by:

       •   Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)

       •   Marek Kokot

       •   Szymon Grabowski

       •   Agnieszka Debudaj-Grabysz

       KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

                                                                                          KMC_TOOLS-INTERSECT(1)

       The output database will contain only k-mers that are present in both input sets. The counter value in
       the output database is equal to the lower counter value in the input.

           kmc -k28 file1.fastq kmers1 tmp
           kmc -k28 file2.fastq kmers2 tmp
           kmc_tools intersect kmers1 -ci10 -cx200 kmers2 -ci4 -cx100 kmers1_kmers2_intersect -ci20 -cx150

       kmc_tools-intersect - calculate intersection of two KMC databases

       For each input there are additional parameters:

       -ci<value>
           exclude k-mers occurring less than <value> times

       -cx<value>
           exclude k-mers occurring more of than <value> times

       For output there are additional parameters:

       -ci<value>
           exclude k-mers occurring less than <value> times

       -cx<value>
           exclude k-mers occurring more of than <value> times

       -cs<value>
           maximal value of a counter

kmc_toolsintersect <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>