kmc_tools-union - calculate union of two KMC databases
Contents
Copying
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.
KMC_TOOLS-UNION(1)
Description
The output database will contain all k-mers present in both input sets. For the same k-mers in the first
and the second input, the counter in the output is equal to the sum from both inputs.
Example
kmc -k28 file1.fastq kmers1 tmp kmc -k28 file2.fastq kmers2 tmp kmc_tools union kmers1 -ci3 -cx70000
kmers2 kmers1_kmers2_union -cs65536
Name
kmc_tools-union - calculate union of two KMC databases
Options
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
For output there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
-cs<value>
maximal value of a counter
Synopsis
kmc_toolsunion <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>
