mash2matrix - create all pairwise distances between samples

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

mash2matrix 1.1.2                                  March 2017                                     MASH2MATRIX(1)

       Uses mash (http://mash.readthedocs.io/) to create all pairwise distances between samples.

       NB: the input to mash should be the same order as the .pheno file generate <assemblies.fa> with:

              cut -f 1 metadata.pheno | tr '

              ' ' '

       Then run

              mash sketch -o reference <assemblies.fa>

              mash dist reference.msh reference.msh > mash_distances.txt

              mash2matrix mash_distances.txt > all_distances.csv

       mash2matrix - create all pairwise distances between samples

mash2matrix<matrix_in>>all_distances.csv