vcfannotate
Contents
Description
Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the
reference sequences in the VCF file. If no VCF filename is specified on the command line (last argument)
the VCF read from stdin.
Exit Values
0 Success
not0 Failure
License
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C)
Pjotr Prins.
Name
vcfannotate
Options
options:
-b, --bed use annotations provided by this BED file
-k, --key use this INFO field key for the annotations
-d, --default use this INFO field key for records without annotations
Type: transformation
Other
See Also
vcflib(1)
Synopsis
vcfannotate options []
