reconcile - This program outputs the reconciliation that minimizes the number of duplications

       This program outputs the reconciliation that minimizes the number of duplications

0      Successful program execution.

       1      Some error occurred

       reconcile - This program outputs the reconciliation that minimizes the number of duplications

--help Display help (this text).

       -V, --version
              Print version and exit

       -r, --reroot any|random|no
              Reroot  the  tree  to  minimize the number of implied duplications/losses if the most parsimonious
              reconciliation is chosen. Default is "no".

       -w--weightsFLOATFLOAT
              Determine the relative importance of duplications vs losses. First weight is for duplications  and
              the second for losses. The default is 1.0,0.0 which counts duplications only. Weights are required
              to be positive.

primeDTLSR(1),   primeDLRS(1),  primeGEM(1),  chainsaw(1),  reconcile(1),  reroot(1),  tree2leafnames(1),
       treesize(1)

prime-phylo 1.0.11                                13 Mar, 2012                                      reconcile(1)

reconcile [OPTIONS] gene-treespecies-tree [gene-species-map]

       The prime-phylo home page: http://prime.sbc.su.se