simkaMinCore - comparative metagenomics method dedicated to NGS datasets
Contents
Description
[Distance computation options]
sketch : transform datasets in small sketches of k-mers and their abundance
distance
: compute Jaccard and Bray-Curtis distances between sketches
[Distance matrix manipulation options]
export : export distance matrices stored in binary format
[Sketch options]
append : merge multiple sketch files into a single one
info : list datasets contained in a sketch file
Name
simkaMinCore - comparative metagenomics method dedicated to NGS datasets
Synopsis
simkaMin [option]
