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slice_fasta_gff - Slice subsequences from an input FASTA file

Author

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

slice_fasta_gff 1.15.9                            December 2015                               SLICE_FASTA_GFF(1)

Description

       slice_fasta from FSA 1.15.9

Name

       slice_fasta_gff - Slice subsequences from an input FASTA file

Options

-t, --type <string>
              only look at features of particular type

       Slice  subsequences  from  an input FASTA file.  Assumes 1-based, fully-closed coordinates.  If no strand
       information is available, then the + strand  is  assumed.   If  the  -  strand  is  requested,  then  the
       subsequence is pulled out and then reverse-complemented.

       Assumes a DNA alphabet.

Synopsis

slice_fasta [options] <FASTAfile><GFFfile>

See Also