slice_fasta_gff - Slice subsequences from an input FASTA file
Contents
Description
slice_fasta from FSA 1.15.9
Name
slice_fasta_gff - Slice subsequences from an input FASTA file
Options
-t, --type <string>
only look at features of particular type
Slice subsequences from an input FASTA file. Assumes 1-based, fully-closed coordinates. If no strand
information is available, then the + strand is assumed. If the - strand is requested, then the
subsequence is pulled out and then reverse-complemented.
Assumes a DNA alphabet.
Synopsis
slice_fasta [options] <FASTAfile><GFFfile>
