File management Man Pages

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bamfilterrg - filter read groups from a BAM file

bamfilterrg.py - filter readgroup(s) from a BAM file

bamflagsplit - sort BAM files by coordinate or query name

bamg - a two - dimensional anisotropic mesh generator and...

bamg2geo - convert bamg mesh in geo format (rheolef-7.2)

bamindex - create index for BAM file

bamintervalcomment - sort BAM files by coordinate or quer...

bammarkduplicates - mark duplicate reads/alignments in BA...

bammarkduplicates2 - mark duplicate reads/alignments in B...

bammarkduplicatesopt - mark duplicate reads/alignments in...

bammdnm - compute MD and NM fields

bammerge - merge BAM files

bamrank - insert the rank (line number) of each alignment...

bamranksort - sort BAM files by rank

bamrecalculatecigar - concatenate BAM files

bamrecompress - recompress BAM file

bamreset - reset BAM file to unaligned state

bamsormadup - sort name collated SAM or BAM file by c...

bamsplit - split BAM files

bamsplitdiv - split BAM file into a set of BAM files

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