Modesofoperation
For sequence ordinal 's' and position in that sequence 'p':
-count reports the count (c) of the single kmer that starts at position (p).
Format: 's p c'
-depth reports the number (n) of kmers that span position (p).
Format: 's p n'
-stats reports the minimum (m), maximum (M), and average (a) count of all mers that span position (p).
also reports total count (t) and number of kmers (n)
Format: 's p m M a t n'
General-mMERSIZE-mersMERYLmeryl(1) database
-seqIN.FASTA
fasta input sequence