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mapMers-depth - report information about mapping kmers to sequences

Name

       mapMers-depth - report information about mapping kmers to sequences

Options

Modesofoperation
       For sequence ordinal 's' and position in that sequence 'p':

       -count reports the count (c) of the single kmer that starts at position (p).

              Format: 's p c'

       -depth reports the number (n) of kmers that span position (p).

              Format: 's p n'

       -stats reports  the  minimum  (m), maximum (M), and average (a) count of all mers that span position (p).
              also reports total count (t) and number of kmers (n)

              Format: 's p m M a t n'

   General-mMERSIZE-mersMERYLmeryl(1) database

       -seqIN.FASTA
              fasta input sequence

See Also

meryl(1), mapMers(1)

mapMers-depth 0~20150520+2004                       May 2015                                    MAPMERS-DEPTH(1)

Synopsis

mapMers-depth {-count|-depth|-stats} -mersMERYL-mMERSIZE-seqIN.FASTA

See Also