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bp_genbank2gff3.pl -- Genbank->gbrowse-friendly GFF3

bp_genbank_ref_extractor - Retrieves all related sequence...

bp_hmmer_to_table - turn HMMER output into tabular format

bp_index.pl - indexes files for use by bp_fetch.pl

bp_load_gff.pl - Load a Bio::DB::GFF database from GFF fi...

bp_local_taxonomydb_query - query a local TaxonomyDB for ...

bp_make_mrna_protein - Convert an input mRNA/cDNA sequenc...

bp_mask_by_search - mask sequence(s) based on its alignme...

bp_meta_gff.pl - Get/set Bio::DB::GFF meta-data

bp_mrtrans - implement a transformer of alignments from p...

bp_mutate.pl - randomly mutagenize a single protein or DN...

bp_nexus2nh - convert nexus format trees (from PAUP* and ...

bp_nrdb.PLS - a script to emulate Warren Gish's nrdb, mak...

bp_oligo_count - oligo count and frequency

bp_pairwise_kaks - calculate pairwise Ka,Ks for a set of ...

bp_parse_hmmsearch - parse single/multiple HMMSEARCH resu...

bp_process_gadfly.pl - Massage Gadfly/FlyBase GFF files i...

bp_process_sgd.pl - Massage SGD annotation flat files int...

bp_process_wormbase.pl - Massage WormBase GFF files into ...

bp_query_entrez_taxa - query Entrez taxonomy database and...

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